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Updated the license header to work with the updated formatter and re-appended it to all files.
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Fixed more minor TODOs and removed more TODOs that are no longer needed.

Issue: MIRTH-2675

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Initial Mirth Connect 3.0 commit. Updated Client to use Donkey.

Issue: MIRTH-2250

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Created a new implementation of the working stack so that the most recent status is always displayed, even when a prior job finishes. This fixes a bug that caused an incorrect status to be displayed when one job was taking longer than another. Added a new startWorking method that returns an id and a stopWorking method that accepts an id.

Issue: MIRTH-1935

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Refactored
Removed the save task from extensions. Now enabling and disabling extensions is done individually in the database without requiring a save.

Issue: MIRTH-1711

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Updated the Client extension manager so that the build compiles successfully. The new method of storing whether or not a plugin is enabled is not yet implemented on the client.

Issue: MIRTH-1711

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Added new method for importing file as String rather than File since that is how it was used most of the time

Message list now refreshes immediately after import

Refactored file filter

Issue: MIRTH-1555

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Changed bugtraq:url
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Removed Client Panel Plugins and PluginPanel. Changed ExtensionManager to be included as a core component in Mirth Connect.

Refactored all plugins to use some new abstract methods and removed useless methods.

Issue: MIRTH-1619

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    ./ExtensionInfoDialog.java
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    ./ExtensionManagerPanel.form
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    ./ExtensionUpdateDialog.java
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    ./ExtensionUtil.java
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    ./ExtensionManagerPanel.java
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    ./ExtensionInfoDialog.form
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    ./ExtensionUpdateDialog.form
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